• Accuracy of Molecular Simulation-Based Predictions of koff Values: A Metadynamics Study 

      Capelli, Riccardo; Lyu, Wenping; Bolnykh, Viacheslav; Meloni, Simone; Olsen, Jógvan Magnus Haugaard; Rothlisberger, Ursula; Parrinello, Michele; Carloni, Paolo (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-07-16)
      The koff values of ligands unbinding to proteins are key parameters for drug discovery. Their predictions based on molecular simulation may under- or overestimate experiment in a system- and/or technique-dependent way. Here we use an established method infrequent metadynamics, based on the AMBER force field to compute the koff of the ligand iperoxo (in clinical use) targeting the muscarinic receptor ...